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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3867260_3867429_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3867260 - 3867429
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TCCTATTTAAGA
Flanking Amino Acid:
LSQLKEHLRKGENLVNKRDE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
77.3
0.61
1
72.9
42.2
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
53.7
0.11
1.8
63.36
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016423
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017141
3865621 - 3869863
4243