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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_386775_387155_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
386775 - 387155
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
ATTGCTTCCATT
Flanking Amino Acid:
TRLILLTEDQPTLEINHHAG
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
65
0.37
1.3
76.1
38
Major PPT
76.2
0.59
0.9
66.4
39.4
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
47.6
-0.1
2
69.9
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002772
377747 - 398421
20675