Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_388684_390478_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

388684 - 390478

Intron Length:

1795

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATCTGTG

5'SS Class:

major

3'SS Sequence:

TTTCCATCCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCTCTTTCCATC

Flanking Amino Acid:

PHMDAACGVLDEKPWKGRHW

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.2

68.8

42.3

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

80.1

0.68

0.8

77.9

29.6

Minor 5ss

47.9

-0.2

2.9

66.4

45.1

Minor BPS

44.5

-0.4

1.8

54.74

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002709

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002772

377747 - 398421

20675