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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3889149_3889671_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3889149 - 3889671
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAATGGGG
5'SS Class:
major
3'SS Sequence:
TCTCCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCTAT
U12 Branch Point Sequence:
CTGCCCCTATGG
Flanking Amino Acid:
ASRCLVQHHGVGSASVHPGV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
58.3
43.7
Major BPS
47.5
-0.1
1.3
44
39
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
17.9
-3.7
3.9
20.1
37.7
Minor BPS
41.1
-0.8
2.1
45.12
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017029
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043524
3888959 - 3890726
1768