Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3889333_3889436_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3889333 - 3889436

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GCTGTCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAA

U12 Branch Point Sequence:

GGGTCTTGGAGT

Flanking Amino Acid:

QGFTGENCEIDIDDCLSSPC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

72.6

38.9

Major BPS

49.1

-0

1.3

58.4

40.3

Major PPT

69.3

0.43

0.9

34.8

Minor 5ss

31.3

-2.1

3.3

40.9

45.3

Minor BPS

47.2

-0.1

1.8

60.95

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029853

3884905 - 3891537

6633