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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3889551_3889743_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3889551 - 3889743
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
CATGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTGTCCCCAGTC
Flanking Amino Acid:
PSYGGSRCEKDTEGCDHNWH
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
69.5
0.44
0.9
62.3
34.3
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
44.2
-0.4
2
55.16
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017029
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029853
3884905 - 3891537
6633