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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3890361_3890450_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3890361 - 3890450
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
CGTCTCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATCACCC
Flanking Amino Acid:
DFQWTDNTGLQYENWRENQP
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.2
39.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
67.8
0.4
0.9
59.5
36.9
Minor 5ss
26.7
-2.7
3.1
31.2
36.3
Minor BPS
46.5
-0.2
2.1
59.43
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017029
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029853
3884905 - 3891537
6633