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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3895602_3896208_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3895602 - 3896208

Intron Length:

607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTTGCA

5'SS Class:

major

3'SS Sequence:

GCCCTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

CCCTGCTCGACG

Flanking Amino Acid:

DTGMVKLDLEGVIFPYHPRL

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

67.9

37.4

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

67.4

0.39

0.8

57.6

33.3

Minor 5ss

31.6

-2.1

3.3

41.6

44.9

Minor BPS

44.6

-0.5

2.1

46.08

Associated Gene:

Gene:

HAPLN4

Ensembl Gene ID:

ENSAPLG00000000916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000894

3894154 - 3902738

8585