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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3904618_3905129_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3904618 - 3905129
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAATT
Flanking Amino Acid:
LAYRFRPNPLNNPRRPYY*
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.2
39.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.1
0.65
0.8
73.5
31.3
Minor 5ss
38.6
-1.3
3.4
52.7
46.4
Minor BPS
66.8
0.61
2
89.07
35.8

Associated Gene:

Gene:
SUGP1
Ensembl Gene ID:
ENSAPLG00000002500
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002534
3904591 - 3922176
17586