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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3905260_3906691_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3905260 - 3906691
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTCCAAACA
Flanking Amino Acid:
DGQGIKNPVSKGTTAVDGAG
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
78.1
0.63
0.9
74.9
33.8
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
60.6
0.33
2
79.54
36.7

Associated Gene:

Gene:
SUGP1
Ensembl Gene ID:
ENSAPLG00000002500
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002534
3904591 - 3922176
17586