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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_390639_395394_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
390639 - 395394
Intron Length:
4756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCCTTTCACA
Flanking Amino Acid:
KVAISNCNGLHGVIVADEEE
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.6
0.85
0.7
83.3
25.1
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
68.2
0.57
1.7
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002709
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034695
390417 - 397207
6791
ENSAPLT00000002772
377747 - 398421
20675
ENSAPLT00000037262
390417 - 399662
9246