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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3916246_3917915_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3916246 - 3917915
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAG
5'SS Class:
strong_major
3'SS Sequence:
AGCCTGCTTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GCCTGCTTAAAG
Flanking Amino Acid:
QSSQASSSQKVSPPEDEETK
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
79.8
35.1
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
58
0.18
1.1
55.5
38.8
Minor 5ss
35.1
-1.7
2.7
42.1
44.6
Minor BPS
49.5
-0.1
2
52.97
47.4

Associated Gene:

Gene:
SUGP1
Ensembl Gene ID:
ENSAPLG00000002500
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002534
3904591 - 3922176
17586