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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3923298_3923974_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3923298 - 3923974
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTGAC
U12 Branch Point Sequence:
CTCTGGTTGACT
Flanking Amino Acid:
SLLSELYCQENSVDTAKPLL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
47.7
-0.1
2.5
70.4
47

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917