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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3925823_3926407_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3925823 - 3926407
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
YARVVGSEYTRALFLLSKGM
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917