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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3928908_3929926_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3928908 - 3929926
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTTTTCCAACA
Flanking Amino Acid:
TGHKATALQEISQVCQLCQQ
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
81.3
0.7
0.8
77.7
29.6
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
50.9
0.03
1.9
67.52
39.2

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917