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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3930655_3930952_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3930655 - 3930952
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTGACTGTACT
Flanking Amino Acid:
AEAQFTTALRLTTHQELWAF
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.5
36.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.5
0.78
0.8
82.2
34.1
Minor 5ss
42.2
-0.9
3.4
56.2
48
Minor BPS
49.9
0.08
2.1
78.16
43.6

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917