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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3931037_3932037_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3931037 - 3932037
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CACTGATTATCT
Flanking Amino Acid:
YIREGNRQQELYSLLERINP
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.3
0.7
0.8
76.7
31.5
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
44.8
-0.3
2.2
61.85
47.6

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917