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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3932088_3932335_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3932088 - 3932335
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CATGCCTGGATT
Flanking Amino Acid:
RINPDHNFPVSSHCLRAAAF
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.8
0.53
0.9
68.8
37.1
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
53.6
0.19
1.6
68.3
43

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917