About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3932414_3932872_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3932414 - 3932872
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTAAAACA
Flanking Amino Acid:
SFFQGRYNEAKRFLRETLKM
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.7
0.56
1
72.9
37.4
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
50.4
0.01
1.9
68.26
38.3

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917