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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3932985_3933595_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3932985 - 3933595
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATGTTGATA
Flanking Amino Acid:
HIFYVLGNHRESNNMVVPAM
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
68.8
43.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
73.2
0.52
0.9
66.5
39.4
Minor 5ss
38.3
-1.3
2.8
40.5
45.5
Minor BPS
51.5
0.04
2.1
70.1
36.4

Associated Gene:

Gene:
MAU2
Ensembl Gene ID:
ENSAPLG00000002818
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002891
3922418 - 3938334
15917