Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4005544_4005742_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4005544 - 4005742

Intron Length:

199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACACTTG

5'SS Class:

major

3'SS Sequence:

TTTTTTTAATTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

MMGRDHERWQGGDRSMPGQS

Intron Amino Acid Position:

896

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

63.2

43.9

Major BPS

87.3

0.93

0.8

36.5

Major PPT

80.5

0.69

0.9

83.1

32.3

Minor 5ss

45.7

-0.4

3.2

64.2

47.3

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006607

4004863 - 4020887

16025