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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4008450_4009284_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4008450 - 4009284
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
TTTTGTGTATTT
Flanking Amino Acid:
AMRRPYDPDGRRDDPYWPEA
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
46.1
-0.2
2.5
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006355
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006607
4004863 - 4020887
16025