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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4009579_4010228_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4009579 - 4010228
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
GCTCTTTTAATT
Flanking Amino Acid:
EREIRETERRRERERREREQ
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
72.7
0.51
0.9
74.4
34.1
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
65.2
0.55
1.2
73.2
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006355
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006607
4004863 - 4020887
16025