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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4011007_4011713_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4011007 - 4011713
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTC
Flanking Amino Acid:
PSDRSRASKSASRGTERTVV
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
56.1
0.17
1.7
68.29
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006355
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006607
4004863 - 4020887
16025