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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4012844_4012939_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4012844 - 4012939
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
GCTAAAATTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTCTATTAAAA
Flanking Amino Acid:
LHGKMISVEKAKNEPAGKKP
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
59.8
0.22
1
48.5
43.6
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
54.4
0.13
1.7
67.07
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006355
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006607
4004863 - 4020887
16025