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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4014655_4015072_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4014655 - 4015072
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTTGTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGAAT
U12 Branch Point Sequence:
CTTGGTTGAATA
Flanking Amino Acid:
STSEGGDQKKSPVEEDRDTK
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
56.8
0.17
1.6
69.7
44.2
Major PPT
80
0.67
0.8
77.9
36.6
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
47
-0.2
1.9
59.09
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006355
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006607
4004863 - 4020887
16025