Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4015572_4016509_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4015572 - 4016509

Intron Length:

938

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTGG

5'SS Class:

major

3'SS Sequence:

GTTAAATCCGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

TTCCTGTTAAAT

Flanking Amino Acid:

KETEELPLEPENEKILDILG

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

54.3

45.2

Major BPS

73.5

0.58

79.3

29.4

Major PPT

62.7

0.29

0.9

55.7

39.9

Minor 5ss

35.1

-1.7

3.4

47.5

47.9

Minor BPS

51.2

0.12

2.1

74.05

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006607

4004863 - 4020887

16025