Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4016375_4016509_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4016375 - 4016509

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGTGG

5'SS Class:

major

3'SS Sequence:

TGCATTACCATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATTTTTTAATG

Flanking Amino Acid:

KETEELPLEPVYLILWWTIQ

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

54.3

45.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

64.4

0.32

0.9

58.3

37.1

Minor 5ss

35.1

-1.7

3.4

47.5

47.9

Minor BPS

72.9

0.58

1.2

71.67

35.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024413

4016102 - 4020887

4786