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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4017258_4018373_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4017258 - 4018373
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCATC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
EESREIPVAMVEAEDVGNSF
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
70.6
39.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.3
0.59
1
74.9
39
Minor 5ss
50.7
0.03
2.5
66
39.6
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006355
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006607
4004863 - 4020887
16025
ENSAPLT00000024413
4016102 - 4020887
4786