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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4022501_4024001_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4022501 - 4024001
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAGT
5'SS Class:
major
3'SS Sequence:
ATCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTCAGT
Flanking Amino Acid:
TKRMPKRTSKGRKPEEEGAE
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.9
44.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89.8
0.9
0.7
88.4
28
Minor 5ss
32.3
-2
3.5
48.9
46.9
Minor BPS
50.4
0.09
2.2
78.43
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951