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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4025804_4026701_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4025804 - 4026701
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTA
5'SS Class:
major
3'SS Sequence:
GTTAAATCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTCCTGTTAAAT
Flanking Amino Acid:
KKTEKLHLEPENEKILDILG
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
68.7
38.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
62.7
0.29
0.9
55.7
39.9
Minor 5ss
39.3
-1.2
3.5
55.9
48.2
Minor BPS
51.2
0.12
2.1
74.05
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951