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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4027673_4029940_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4027673 - 4029940
Intron Length:
2268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAG
U12 Branch Point Sequence:
TTTTCCTTATTA
Flanking Amino Acid:
DTKIISKDEKGRTSSSSGRN
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
63.6
0.34
1.5
63.1
44.4
Major PPT
81.7
0.71
0.8
82.7
27.5
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
78.9
0.9
1.4
87.27
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951