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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4031378_4032353_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4031378 - 4032353
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
TATCTATTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TAATCTATATCA
Flanking Amino Acid:
NEVKKETVSERPGSIKRDDK
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
70.2
0.5
1
72.1
33
Major PPT
79.1
0.66
0.8
73.5
35.7
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
52
0.06
1.9
66.56
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951