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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4034325_4034604_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4034325 - 4034604
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
CCTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTAACCTGACT
Flanking Amino Acid:
AMRRPYDIDGRRDDPYWPEA
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.7
0.83
0.7
84.8
28.4
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
57
0.3
1.9
82.48
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951