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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4035307_4036564_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4035307 - 4036564
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ACTCATATAAAT
Flanking Amino Acid:
RTMMGDRDGQHYPDERHGGP
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
83
0.74
0.7
81.1
31
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
46
-0.2
1.8
63.33
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951