About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4037539_4037657_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4037539 - 4037657
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
MIGRDHERWQGGGRGRPGHV
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951