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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4037710_4037993_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4037710 - 4037993
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
AATCACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AACTTCTGAATC
Flanking Amino Acid:
GHVMHRGGMSGRGGFIQGGN
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.1
0.43
0.9
59.2
41.7
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
58.8
0.26
1.4
62.38
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005780
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006039
4021420 - 4038370
16951