About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4041725_4046021_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4041725 - 4046021
Intron Length:
4297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTTAAAAAT
5'SS Class:
weak_major
3'SS Sequence:
TTGATTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTAATATGAACT
Flanking Amino Acid:
DTPFFFFFQKVFIIKGSLAG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.2
59.1
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.8
0.76
0.8
81.3
36.2
Minor 5ss
32.8
-2
3
42.7
43.9
Minor BPS
49
0
1.8
67.63
42.5

Associated Gene:

Gene:
MICOS13
Ensembl Gene ID:
ENSAPLG00000001598
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001589
4039625 - 4046140
6516