Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4049490_4050075_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4049490 - 4050075

Intron Length:

586

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

GTCTTTTCCATT

Flanking Amino Acid:

GSLVVVSSLTGKIPTPFTTS

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

86.4

29.2

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

88.1

0.86

0.7

80.5

31.5

Minor 5ss

-1.7

3.3

46.3

Minor BPS

46.2

-0.2

1.9

63.62

41.8

Associated Gene:

Gene:

HSD11B1L

Ensembl Gene ID:

ENSAPLG00000005717

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005916

4044917 - 4051291

6375