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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4050242_4050530_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4050242 - 4050530
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GATTCTCTGATT
Flanking Amino Acid:
IDTDTALEKTRGKVYLTASP
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
79
0.72
1
69
38.9
Major PPT
91.6
0.94
0.6
84.4
30.5
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
56.8
0.29
1.6
73.33
37.5

Associated Gene:

Gene:
HSD11B1L
Ensembl Gene ID:
ENSAPLG00000005717
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005916
4044917 - 4051291
6375