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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4055605_4055715_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4055605 - 4055715
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTACTAT
U12 Branch Point Sequence:
CTACTACTATCT
Flanking Amino Acid:
DRATNQSKCFGFVSFDNPSS
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
49.9
-0
1.4
50.5
43.3
Major PPT
80.1
0.68
0.8
76.9
31.8
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
41.9
-0.5
2
60
42.9

Associated Gene:

Gene:
CELF5
Ensembl Gene ID:
ENSAPLG00000005174
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005373
4055440 - 4090271
34832