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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4058624_4062470_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4058624 - 4062470
Intron Length:
3847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CCCTGCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
AGGGCTTTGACG
Flanking Amino Acid:
FSPYSAYAQALMQQQTTVLS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
78.3
0.64
0.8
71.7
32.7
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
52.9
-0
1.5
52.88
42.4

Associated Gene:

Gene:
CELF5
Ensembl Gene ID:
ENSAPLG00000005174
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005373
4055440 - 4090271
34832