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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4062618_4063753_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4062618 - 4063753
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCTCTGTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTCT
U12 Branch Point Sequence:
CTTTCTCTGTCT
Flanking Amino Acid:
HALHGSQTMPGASSSLVVKF
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
69.1
43.2
Major BPS
29.2
-1.3
4.2
58.5
47.9
Major PPT
67.7
0.4
0.9
61
40.2
Minor 5ss
35.8
-1.6
2.9
47
41.7
Minor BPS
42.3
-0.5
3.6
75.39
41.9

Associated Gene:

Gene:
CELF5
Ensembl Gene ID:
ENSAPLG00000005174
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005373
4055440 - 4090271
34832