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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4102593_4102680_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4102593 - 4102680
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTTGCTCTCACT
Flanking Amino Acid:
TRVIYNLTDKGAPADLQIFT
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
72.7
0.56
1
75
30.1
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
48
-0
2.2
71.75
45.6

Associated Gene:

Gene:
NCLN
Ensembl Gene ID:
ENSAPLG00000004844
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038871
4097699 - 4108101
10403