Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4103159_4103586_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4103159 - 4103586

Intron Length:

428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATGAAA

5'SS Class:

major

3'SS Sequence:

GCCTTTCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGAAT

U12 Branch Point Sequence:

ACACCCTTGAAT

Flanking Amino Acid:

QHAFLRELELVVASQFPEVK

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

69.5

36.2

Major BPS

62.3

0.31

1.4

73.3

39.1

Major PPT

75.5

0.57

0.8

72.9

Minor 5ss

31.8

-2.1

3.1

36.4

41.9

Minor BPS

59.2

0.37

1.5

69.13

41.2

Associated Gene:

Gene:

NCLN

Ensembl Gene ID:

ENSAPLG00000004844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038871

4097699 - 4108101

10403

ENSAPLT00000005049

4100954 - 4108101

7148