Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4103984_4104412_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4103984 - 4104412

Intron Length:

429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCCAT

5'SS Class:

major

3'SS Sequence:

CTTTGATGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TTGTCTTTGATG

Flanking Amino Acid:

RLYTYRRTHAGYNLLFFASG

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

68.8

43.8

Major BPS

0.85

0.9

39.9

Major PPT

65.4

0.35

1.1

61.8

43.6

Minor 5ss

39.1

-1.2

3.1

48.3

47.3

Minor BPS

69.5

0.47

1.3

69.68

38.6

Associated Gene:

Gene:

NCLN

Ensembl Gene ID:

ENSAPLG00000004844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005049

4100954 - 4108101

7148

ENSAPLT00000038871

4097699 - 4108101

10403