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Intron Name: Anas_platyrhynchos_platyrhynchos_29_4106217_4107920_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4106217 - 4107920

Intron Length:

1704

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGCGG

5'SS Class:

major

3'SS Sequence:

TTTCTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

GCTTCCTAAACC

Flanking Amino Acid:

QQYELGGQPYGTRSAVLNTE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

51.7

46.6

Major BPS

72.7

0.57

72.1

31.1

Major PPT

89.7

0.89

0.6

85.1

22.4

Minor 5ss

25.2

-2.9

3.1

30.3

42.8

Minor BPS

69.4

0.59

1.7

75.04

41.8

Associated Gene:

Gene:

NCLN

Ensembl Gene ID:

ENSAPLG00000004844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005049

4100954 - 4108101

7148

ENSAPLT00000038871

4097699 - 4108101

10403