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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4122491_4123359_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4122491 - 4123359
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCATTCTCACTA
Flanking Amino Acid:
SWVMTAAQCFSHKPLTVILG
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
69.5
0.44
0.9
63.7
37.9
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
48.8
-0
1.8
59.52
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019679
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021095
4122048 - 4124600
2553