Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4123502_4123656_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4123502 - 4123656

Intron Length:

155

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

ATTTCTATATTT

Flanking Amino Acid:

MQGNDILLLKLKGNATSNSY

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

1.1

74.6

37.4

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

0.56

0.9

68.3

37.4

Minor 5ss

39.5

-1.2

3.1

53.7

43.5

Minor BPS

0.3

1.8

79.08

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019679

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021095

4122048 - 4124600

2553