About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4123891_4124462_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4123891 - 4124462
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
TCTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTCTCTTATTT
Flanking Amino Acid:
NSGSAGVPEEGDTGGPLVCN
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
84.7
0.78
0.7
80.1
31.6
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
61.9
0.45
1.6
76.56
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019679
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021095
4122048 - 4124600
2553